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A Survey on Deep Learning for Software Engineering

Yanming Yang, Xin Xia, David Lo, John Grundy • ACM Computing Surveys (2021)

In 2006, Geoffrey Hinton proposed the concept of training “Deep Neural Networks (DNNs)” and an improved model training method to break the bottleneck of neural network development. More recently, the introduction of AlphaGo in 2016 demonstr...

OPENALEX Open Access DOI: https://doi.org/10.1145/3505243

High-fidelity single-frame computational super-resolution using signal-preserving denoising-enabled deconvolution

Fudong Xue, Lin Yuan, Wenting He, Zuo’ang Xiang et al. • Nature Communications (2026)

Abstract Computational super-resolution (SR) methods enable nanoscale imaging from single-frame wide-field or spinning-disk confocal images without hardware modifications, yet face limitations: statistical restoration suffers from noise and...

DOAJ Open Access (DOAJ) DOI: 10.1038/s41467-026-70791-8

DeepPROTACs is a deep learning-based targeted degradation predictor for PROTACs

Fenglei Li, Qiaoyu Hu, Xianglei Zhang, Renhong Sun et al. • Nature Communications (2022)

The rational design of PROTACs is difficult due to their obscure structure-activity relationship. Here the authors present a deep neural network model - DeepPROTACs - for predicting the degradation capacity of a proposed PROTAC molecule....

DOAJ Open Access (DOAJ) DOI: 10.1038/s41467-022-34807-3

Vison transformer adapter-based hyperbolic embeddings for multi-lesion segmentation in diabetic retinopathy

Zijian Wang, Haimei Lu, Haixin Yan, Hongxing Kan et al. • Scientific Reports (2023)

Abstract Diabetic Retinopathy (DR) is a major cause of blindness worldwide. Early detection and treatment are crucial to prevent vision loss, making accurate and timely diagnosis critical. Deep learning technology has shown promise in the a...

DOAJ Open Access (DOAJ) DOI: 10.1038/s41598-023-38320-5

Deep metabolome: Applications of deep learning in metabolomics

Yotsawat Pomyen, Kwanjeera Wanichthanarak, Patcha Poungsombat, Johannes Francois Fahrmann et al. • Computational and Structural Biotechnology Journal (2020)

In the past few years, deep learning has been successfully applied to various omics data. However, the applications of deep learning in metabolomics are still relatively low compared to others omics. Currently, data pre-processing using con...

OPENALEX cc-by DOI: https://doi.org/10.1016/j.csbj.2020.09.033 PMC: 7575644

Deep learning with COTS HPC systems

Adam Coates, Brody Huval, Tao Wang, David J. Wu et al. (2013)

Scaling up deep learning algorithms has been shown to lead to increased performance in benchmark tasks and to enable discovery of complex high-level features. Recent efforts to train extremely large networks (with over 1 billion parameters)...

OPENALEX

ACtriplet: An improved deep learning model for activity cliffs prediction by integrating triplet loss and pre-training

Xinxin Yu, Yimeng Wang, Long Chen, Weihua Li et al. • Journal of Pharmaceutical Analysis (2025)

Activity cliffs (ACs) are generally defined as pairs of similar compounds that only differ by a minor structural modification but exhibit a large difference in their binding affinity for a given target. ACs offer crucial insights that aid m...

DOAJ Open Access (DOAJ) DOI: 10.1016/j.jpha.2025.101317

Deep learning for electroencephalogram (EEG) classification tasks: a review

Alexander Craik, Yongtian He, Jose Luis Contreras-Vidal • Journal of Neural Engineering (2019)

OBJECTIVE: Electroencephalography (EEG) analysis has been an important tool in neuroscience with applications in neuroscience, neural engineering (e.g. Brain-computer interfaces, BCI's), and even commercial applications. Many of the analyti...

OPENALEX cc-by DOI: https://doi.org/10.1088/1741-2552/ab0ab5

Combining the YOLOv4 Deep Learning Model with UAV Imagery Processing Technology in the Extraction and Quantization of Cracks in Bridges

Szu-Pyng Kao, Yung-Chen Chang, Feng-Liang Wang • Sensors (2023)

Bridges are often at risk due to the effects of natural disasters, such as earthquakes and typhoons. Bridge inspection assessments normally focus on cracks. However, numerous concrete structures with cracked surfaces are highly elevated or ...

DOAJ Open Access (DOAJ) DOI: 10.3390/s23052572

A longitudinal study on students’ self-regulated listening during transition to an English-medium transnational university in China

Sihan Zhou, Gene Thompson • Studies in Second Language Learning and Teaching (2023)

Listening to academic content in English medium instruction (EMI) classrooms at university can be a demanding task for students who transition from first language (L1) instructed secondary schools. This longitudinal mixed methods study anal...

DOAJ Open Access (DOAJ) DOI: 10.14746/ssllt.38281

Deep Learning for Cardiac Image Segmentation: A Review

Chen Chen, Chen Qin, Huaqi Qiu, Giacomo Tarroni et al. • Frontiers in Cardiovascular Medicine (2020)

Deep learning has become the most widely used approach for cardiac image segmentation in recent years. In this paper, we provide a review of over 100 cardiac image segmentation papers using deep learning, which covers common imaging modalit...

OPENALEX cc-by DOI: https://doi.org/10.3389/fcvm.2020.00025 PMC: 7066212

Teaching for Deep Learning

Tracy W. Smith, Susan A. Colby • The Clearing House A Journal of Educational Strategies Issues and Ideas (2007)

The authors have been engaged in research focused on students' depth of learning as well as teachers' efforts to foster deep learning. Findings from a study examining the teaching practices and student learning outcomes of sixtyfour teacher...

OPENALEX DOI: https://doi.org/10.3200/tchs.80.5.205-210

Research on high-precision recognition model for multi-scene asphalt pavement distresses based on deep learning

Sheng Zhang, Zhenghao Bei, Tonghua Ling, Qianqian Chen et al. • Scientific Reports (2024)

Abstract Accurate detection of asphalt pavement distress is crucial for road maintenance and traffic safety. However, traditional convolutional neural networks usually struggle with this task due to the varied distress patterns and complex ...

DOAJ Open Access (DOAJ) DOI: 10.1038/s41598-024-77173-4

Deep Learning with Microfluidics for Biotechnology

Jason Riordon, Dušan Sovilj, Scott Sanner, David A. Sinton et al. • Trends in biotechnology (2018)

Advances in high-throughput and multiplexed microfluidics have rewarded biotechnology researchers with vast amounts of data but not necessarily the ability to analyze complex data effectively. Over the past few years, deep artificial neural...

OPENALEX cc-by DOI: https://doi.org/10.1016/j.tibtech.2018.08.005

Computational Linguistics and Deep Learning

Christopher D. Manning • Computational Linguistics (2015)

Deep Learning waves have lapped at the shores of computational linguistics for several years now, but 2015 seems like the year when the full force of the tsunami hit the major Natural Language Processing (NLP) conferences. However, some pun...

OPENALEX Open Access DOI: https://doi.org/10.1162/coli_a_00239