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Showing 12 of 172 academic articles

Understanding the regulatory grammar of sepsis-causing Staphylococcus aureus bacteria using contexualised DNA language models

Tyrone Chen, Anton Y. Peleg, Sonika Tyagi • Scientific Reports (2025)

Abstract To efficiently and accurately understand, detect, and treat sepsis, we require a deep understanding of how its underlying biological systems work. Conventional methods struggle to provide a detailed view of both the functional and ...

DOAJ Open Access (DOAJ) DOI: 10.1038/s41598-025-16701-2

Thyroid Ultrasound Appropriateness Identification Through Natural Language Processing of Electronic Health Records

Cristian Soto Jacome, MD, Danny Segura Torres, MD, Jungwei W. Fan, PhD, Ricardo Loor-Torres, MD et al. • Mayo Clinic Proceedings: Digital Health (2024)

Objective: To address thyroid cancer overdiagnosis, we aim to develop a natural language processing (NLP) algorithm to determine the appropriateness of thyroid ultrasounds (TUS). Patients and Methods: Between 2017 and 2021, we identified 18...

DOAJ Open Access (DOAJ) DOI: 10.1016/j.mcpdig.2024.01.001

On the character of consciousness

Arto eAnnila • Frontiers in Systems Neuroscience (2016)

The human brain is a particularly demanding system to infer its nature from observations. Thus, there is on one hand plenty of room for theorizing and on the other hand a pressing need for a rigorous theory. We apply statistical mechanics o...

DOAJ Open Access (DOAJ) DOI: 10.3389/fnsys.2016.00027

ACtriplet: An improved deep learning model for activity cliffs prediction by integrating triplet loss and pre-training

Xinxin Yu, Yimeng Wang, Long Chen, Weihua Li et al. • Journal of Pharmaceutical Analysis (2025)

Activity cliffs (ACs) are generally defined as pairs of similar compounds that only differ by a minor structural modification but exhibit a large difference in their binding affinity for a given target. ACs offer crucial insights that aid m...

DOAJ Open Access (DOAJ) DOI: 10.1016/j.jpha.2025.101317

Gut Microbiota and Targeted Biomarkers Analysis in Patients With Cognitive Impairment

Shourong Lu, Ying Yang, Qiao Xu, Shuqiang Wang et al. • Frontiers in Neurology (2022)

Gut microbial alteration is closely associated with brain disorders including cognitive impairment (CI). Gut microbes have the potential to predicate the development of diseases. However, the gut microbial markers for CI remain to be elucid...

DOAJ Open Access (DOAJ) DOI: 10.3389/fneur.2022.834403

Identification of arachidonic acid metabolism-related diagnostic markers in heart failure based on bioinformatics analysis and machine learning

Saiqing Chen, Chunxia Zhang, Yueting Yu • Frontiers in Cardiovascular Medicine (2025)

BackgroundHeart failure (HF) represents the terminal phase of multiple cardiovascular conditions and is associated with significant morbidity and mortality rates. Arachidonic acid (AA), an essential fatty acid, plays a crucial role in modul...

DOAJ Open Access (DOAJ) DOI: 10.3389/fcvm.2025.1625064

Association between myosteatosis and impaired glucose metabolism: A deep learning whole‐body magnetic resonance imaging population phenotyping approach

Matthias Jung, Hanna Rieder, Marco Reisert, Susanne Rospleszcz et al. • Journal of Cachexia, Sarcopenia and Muscle (2024)

Abstract Background There is increasing evidence that myosteatosis, which is currently not assessed in clinical routine, plays an important role in risk estimation in individuals with impaired glucose metabolism, as it is associated with th...

DOAJ Open Access (DOAJ) DOI: 10.1002/jcsm.13527