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Deep Learning and Its Applications in Biomedicine

Chensi Cao, Feng Liu, Hai Tan, Deshou Song et al. • Genomics Proteomics & Bioinformatics (2018)

Advances in biological and medical technologies have been providing us explosive volumes of biological and physiological data, such as medical images, electroencephalography, genomic and protein sequences. Learning from these data facilitat...

OPENALEX cc-by DOI: https://doi.org/10.1016/j.gpb.2017.07.003 PMC: 6000200

Comparing deep learning and pathologist quantification of cell-level PD-L1 expression in non-small cell lung cancer whole-slide images

Leander van Eekelen, Joey Spronck, Monika Looijen-Salamon, Shoko Vos et al. • Scientific Reports (2024)

Abstract Programmed death-ligand 1 (PD-L1) expression is currently used in the clinic to assess eligibility for immune-checkpoint inhibitors via the tumor proportion score (TPS), but its efficacy is limited by high interobserver variability...

DOAJ Open Access (DOAJ) DOI: 10.1038/s41598-024-57067-1

A novel network-level fused deep learning architecture with shallow neural network classifier for gastrointestinal cancer classification from wireless capsule endoscopy images

Muhammad Attique Khan, Usama Shafiq, Ameer Hamza, Anwar M. Mirza et al. • BMC Medical Informatics and Decision Making (2025)

Abstract Deep learning has significantly contributed to medical imaging and computer-aided diagnosis (CAD), providing accurate disease classification and diagnosis. However, challenges such as inter- and intra-class similarities, class imba...

DOAJ Open Access (DOAJ) DOI: 10.1186/s12911-025-02966-0

IoT-RiceMobileNet: An improved lightweight MobileNetV2 Model for real-time multi-class rice disease detection using IoT.

Khawja Imran Masud, Md Yasin Zihad, Mehedi Hasan Shuvo, Mst Raonik Jannat et al. • PLoS ONE (2026)

Early and real-time detection of rice leaf diseases (RLD) poses a significant challenge for farmers, especially in rural regions with limited access to advanced technology. Conventional deep learning models often require substantial computa...

DOAJ Open Access (DOAJ) DOI: 10.1371/journal.pone.0356383

A deep learning model for the localization and extraction of brain tumors from MR images using YOLOv7 and grab cut algorithm

Srigiri Krishnapriya, Yepuganti Karuna • Frontiers in Oncology (2024)

IntroductionBrain tumors are a common disease that affects millions of people worldwide. Considering the severity of brain tumors (BT), it is important to diagnose the disease in its early stages. With advancements in the diagnostic process...

DOAJ Open Access (DOAJ) DOI: 10.3389/fonc.2024.1347363

Deep Learning in Medical Image Analysis

Dinggang G. Shen, Guorong Wu A, Heung‐Il Suk • Annual Review of Biomedical Engineering (2017)

This review covers computer-assisted analysis of images in the field of medical imaging. Recent advances in machine learning, especially with regard to deep learning, are helping to identify, classify, and quantify patterns in medical image...

OPENALEX Open Access DOI: https://doi.org/10.1146/annurev-bioeng-071516-044442 PMC: 5479722

Advancements in 7T magnetic resonance diffusion imaging: Technological innovations and applications in neuroimaging

Lisha Nie, Siyi Li, Bing Wu, Yuhui Xiong et al. • iRADIOLOGY (2024)

Abstract The development of 7‐Tesla (7T) magnetic resonance imaging systems has opened new avenues for exploring the advantages of diffusion imaging at higher field strengths, especially in neuroscience research. This review investigates wh...

DOAJ Open Access (DOAJ) DOI: 10.1002/ird3.92

A machine learning and clustering-based approach for county-level COVID-19 analysis.

Charles Nicholson, Lex Beattie, Matthew Beattie, Talayeh Razzaghi et al. • PLoS ONE (2022)

COVID-19 is a global pandemic threatening the lives and livelihood of millions of people across the world. Due to its novelty and quick spread, scientists have had difficulty in creating accurate forecasts for this disease. In part, this is...

DOAJ Open Access (DOAJ) DOI: 10.1371/journal.pone.0267558

A Cardiovascular Disease Prediction Model Based on Routine Physical Examination Indicators Using Machine Learning Methods: A Cohort Study

Xin Qian, Yu Li, Xianghui Zhang, Heng Guo et al. • Frontiers in Cardiovascular Medicine (2022)

BackgroundCardiovascular diseases (CVD) are currently the leading cause of premature death worldwide. Model-based early detection of high-risk populations for CVD is the key to CVD prevention. Thus, this research aimed to use machine learni...

DOAJ Open Access (DOAJ) DOI: 10.3389/fcvm.2022.854287

Cyclic multiplex fluorescent immunohistochemistry and machine learning reveal distinct states of astrocytes and microglia in normal aging and Alzheimer’s disease

Clara Muñoz-Castro, Ayush Noori, Colin G. Magdamo, Zhaozhi Li et al. • Journal of Neuroinflammation (2022)

Abstract Background Astrocytes and microglia react to Aβ plaques, neurofibrillary tangles, and neurodegeneration in the Alzheimer’s disease (AD) brain. Single-nuclei and single-cell RNA-seq have revealed multiple states or subpopulations of...

DOAJ Open Access (DOAJ) DOI: 10.1186/s12974-022-02383-4

On the use of aspect-based sentiment analysis of Twitter data to explore the experiences of African Americans during COVID-19

Meghna Chaudhary, Kristin Kosyluk, Sylvia Thomas, Tempestt Neal • Scientific Reports (2023)

Abstract According to data from the U.S. Center for Disease Control and Prevention, as of June 2020, a significant number of African Americans had been infected with the coronavirus disease, experiencing disproportionately higher death rate...

DOAJ Open Access (DOAJ) DOI: 10.1038/s41598-023-37592-1

CViewer: a Java-based statistical framework for integration of shotgun metagenomics with other omics datasets

Orges Koci, Richard K. Russell, M. Guftar Shaikh, Christine Edwards et al. • Microbiome (2024)

Abstract Background Shotgun metagenomics for microbial community survey recovers enormous amount of information for microbial genomes that include their abundances, taxonomic, and phylogenetic information, as well as their genomic makeup, t...

DOAJ Open Access (DOAJ) DOI: 10.1186/s40168-024-01834-9