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Showing 20 of 1,623 academic articles

Machine learning and deep learning applications in microbiome research

Ricardo Hernández Medina, Svetlana Kutuzova, Knud Nor Nielsen, Joachim Johansen et al. • ISME Communications (2022)

The many microbial communities around us form interactive and dynamic ecosystems called microbiomes. Though concealed from the naked eye, microbiomes govern and influence macroscopic systems including human health, plant resilience, and bio...

OPENALEX cc-by DOI: https://doi.org/10.1038/s43705-022-00182-9 PMC: 9723725

A Survey on Deep Learning for Software Engineering

Yanming Yang, Xin Xia, David Lo, John Grundy • ACM Computing Surveys (2021)

In 2006, Geoffrey Hinton proposed the concept of training “Deep Neural Networks (DNNs)” and an improved model training method to break the bottleneck of neural network development. More recently, the introduction of AlphaGo in 2016 demonstr...

OPENALEX Open Access DOI: https://doi.org/10.1145/3505243

Integrative multiomics-histopathology analysis for breast cancer classification

Yasha Ektefaie, William Yuan, Deborah A. Dillon, Nancy U. Lin et al. • npj Breast Cancer (2021)

Abstract Histopathologic evaluation of biopsy slides is a critical step in diagnosing and subtyping breast cancers. However, the connections between histology and multi-omics status have never been systematically explored or interpreted. We...

DOAJ Open Access (DOAJ) DOI: 10.1038/s41523-021-00357-y

DeepPROTACs is a deep learning-based targeted degradation predictor for PROTACs

Fenglei Li, Qiaoyu Hu, Xianglei Zhang, Renhong Sun et al. • Nature Communications (2022)

The rational design of PROTACs is difficult due to their obscure structure-activity relationship. Here the authors present a deep neural network model - DeepPROTACs - for predicting the degradation capacity of a proposed PROTAC molecule....

DOAJ Open Access (DOAJ) DOI: 10.1038/s41467-022-34807-3

Presenting the students’ academic achievement causal model based on goal orientation

EBRAHIM NASIRI, ALI POUR-SAFAR, MAHDOKHT TAHERI, ABDULLAH SEDIGHI PASHAKY et al. • Journal of Advances in Medical Education and Professionalism (2017)

Introduction: Several factors play a role in academic achievement, individual’s excellence and capability to do actions and tasks that the learner is in charge of in learning areas. The main goal of this study was to present academic ach...

DOAJ Open Access (DOAJ)

ACtriplet: An improved deep learning model for activity cliffs prediction by integrating triplet loss and pre-training

Xinxin Yu, Yimeng Wang, Long Chen, Weihua Li et al. • Journal of Pharmaceutical Analysis (2025)

Activity cliffs (ACs) are generally defined as pairs of similar compounds that only differ by a minor structural modification but exhibit a large difference in their binding affinity for a given target. ACs offer crucial insights that aid m...

DOAJ Open Access (DOAJ) DOI: 10.1016/j.jpha.2025.101317

Relationship between perceived teacher support and learning engagement among adolescents: Mediation role of technology acceptance and learning motivation

Fuhai An, Jingyi Yu, Linjin Xi • Frontiers in Psychology (2022)

This study is aimed at investigating the relationship between perceived teacher support and learning engagement and exploring the mediation role played by technology acceptance and learning motivation. It adopted a structural equation model...

DOAJ Open Access (DOAJ) DOI: 10.3389/fpsyg.2022.992464

Image Segmentation Using Deep Learning: A Survey

Shervin Minaee, Yuri Y. Boykov, Fatih Porikli, Antonio Plaza et al. • IEEE Transactions on Pattern Analysis and Machine Intelligence (2021)

Image segmentation is a key task in computer vision and image processing with important applications such as scene understanding, medical image analysis, robotic perception, video surveillance, augmented reality, and image compression, amon...

OPENALEX Open Access DOI: https://doi.org/10.1109/tpami.2021.3059968

A novel agricultural commodity price prediction model integrating deep learning and enhanced swarm intelligence algorithm.

Kaixuan Sun, Qi Yao, Yanhui Li • PLoS ONE (2025)

The volatility of agricultural commodity prices significantly affects market stability and financial market dynamics, especially during periods of economic uncertainty and global shocks. Accurate price prediction, however, remains challengi...

DOAJ Open Access (DOAJ) DOI: 10.1371/journal.pone.0337103

Gene expression inference with deep learning

Yifei Chen, Yi Li, Rajiv Narayan, Aravind Subramanian et al. • Bioinformatics (2016)

MOTIVATION: Large-scale gene expression profiling has been widely used to characterize cellular states in response to various disease conditions, genetic perturbations, etc. Although the cost of whole-genome expression profiles has been dro...

OPENALEX Open Access DOI: https://doi.org/10.1093/bioinformatics/btw074 PMC: 4908320

Book Review: Deep Learning

Kwang Gi Kim • Healthcare Informatics Research (2016)

This book offers a solution to more intuitive problems in these areas. These solutions allow computers to learn from experience and understand the world in terms of a hierarchy of concepts, with each concept defined in terms of its relation...

OPENALEX cc-by-nc DOI: https://doi.org/10.4258/hir.2016.22.4.351

A 2D and 3D segmentation-based microstructure study on the role of brittle phases in diffusion brazed AISI 304L/NiCrSiFeMoB joints

Johannes L. Otto, Lukas M. Sauer, Malte Brink, Thorge Schaum et al. • Materials & Design (2023)

Nickel-based filler metals are frequently used in high temperature vacuum diffusion brazing for austenitic stainless-steel joints when components are subjected to high static or dynamic loads, corrosive environments and elevated temperature...

DOAJ Open Access (DOAJ) DOI: 10.1016/j.matdes.2023.112401

Deep learning for neuroimaging: a validation study

Sergey Plis, Devon Hjelm, Ruslan Salakhutdinov, Elena A. Allen et al. • Frontiers in Neuroscience (2014)

Deep learning methods have recently made notable advances in the tasks of classification and representation learning. These tasks are important for brain imaging and neuroscience discovery, making the methods attractive for porting to a neu...

OPENALEX cc-by DOI: https://doi.org/10.3389/fnins.2014.00229 PMC: 4138493

A comprehensive construction of deep neural network‐based encoder–decoder framework for automatic image captioning systems

Md Mijanur Rahman, Ashik Uzzaman, Sadia Islam Sami, Fatema Khatun et al. • IET Image Processing (2024)

Abstract This study introduces a novel encoder–decoder framework based on deep neural networks and provides a thorough investigation into the field of automatic picture captioning systems. The suggested model uses a “long short‐term memory”...

DOAJ Open Access (DOAJ) DOI: 10.1049/ipr2.13287

Deep Learning in Cardiology

Paschalis Bizopoulos, Dimitris Koutsouris • IEEE Reviews in Biomedical Engineering (2018)

The medical field is creating large amount of data that physicians are unable to decipher and use efficiently. Moreover, rule-based expert systems are inefficient in solving complicated medical tasks or for creating insights using big data....

OPENALEX Open Access DOI: https://doi.org/10.1109/rbme.2018.2885714

Object Detection With Deep Learning: A Review

Zhong‐Qiu Zhao, Peng Zheng, Shou-Tao Xu, Xindong Wu • IEEE Transactions on Neural Networks and Learning Systems (2019)

Due to object detection's close relationship with video analysis and image understanding, it has attracted much research attention in recent years. Traditional object detection methods are built on handcrafted features and shallow trainable...

OPENALEX Open Access DOI: https://doi.org/10.1109/tnnls.2018.2876865

Deep learning for computational chemistry

Garrett B. Goh, Nathan O. Hodas, Abhinav Vishnu • Journal of Computational Chemistry (2017)

The rise and fall of artificial neural networks is well documented in the scientific literature of both computer science and computational chemistry. Yet almost two decades later, we are now seeing a resurgence of interest in deep learning,...

OPENALEX Open Access DOI: https://doi.org/10.1002/jcc.24764