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Natural Language Processing Techniques for Text Classification of Biomedical Documents: A Systematic Review

Cyrille YetuYetu Kesiku, Andrea Chaves-Villota, Begonya Garcia-Zapirain • Information (2022)

The classification of biomedical literature is engaged in a number of critical issues that physicians are expected to answer. In many cases, these issues are extremely difficult. This can be conducted for jobs such as diagnosis and treatmen...

DOAJ Open Access (DOAJ) DOI: 10.3390/info13100499

BioBBC: a multi-feature model that enhances the detection of biomedical entities

Hind Alamro, Takashi Gojobori, Magbubah Essack, Xin Gao • Scientific Reports (2024)

Abstract The rapid increase in biomedical publications necessitates efficient systems to automatically handle Biomedical Named Entity Recognition (BioNER) tasks in unstructured text. However, accurately detecting biomedical entities is quit...

DOAJ Open Access (DOAJ) DOI: 10.1038/s41598-024-58334-x

Understanding the regulatory grammar of sepsis-causing Staphylococcus aureus bacteria using contexualised DNA language models

Tyrone Chen, Anton Y. Peleg, Sonika Tyagi • Scientific Reports (2025)

Abstract To efficiently and accurately understand, detect, and treat sepsis, we require a deep understanding of how its underlying biological systems work. Conventional methods struggle to provide a detailed view of both the functional and ...

DOAJ Open Access (DOAJ) DOI: 10.1038/s41598-025-16701-2

Systematic Evaluation of Research Progress on Natural Language Processing in Medicine Over the Past 20 Years: Bibliometric Study on PubMed

Wang, Jing, Deng, Huan, Liu, Bangtao, Hu, Anbin et al. • Journal of Medical Internet Research (2020)

BackgroundNatural language processing (NLP) is an important traditional field in computer science, but its application in medical research has faced many challenges. With the extensive digitalization of medical information globally and incr...

DOAJ Open Access (DOAJ) DOI: 10.2196/16816

Training‐Efficient Personalised Knee Joint Moment Estimation via an Incremental Broad Learning System

Guoyu Zuo, Minghui Zhang, Jingwei Ren, Qifei Wu et al. • CAAI Transactions on Intelligence Technology (2026)

ABSTRACT Knee joint moment estimation is a critical component in biomechanical analysis, with profound implications for rehabilitation assessment and the development of assistive devices like exoskeletons. However, existing data‐driven appr...

DOAJ Open Access (DOAJ) DOI: 10.1049/cit2.70165

MedScan, a natural language processing engine for MEDLINE abstracts

Svetlana Novichkova, Sergei Egorov, Nikolai Daraselia • Bioinformatics (2003)

MOTIVATION: The importance of extracting biomedical information from scientific publications is well recognized. A number of information extraction systems for the biomedical domain have been reported, but none of them have become widely us...

OPENALEX Open Access DOI: https://doi.org/10.1093/bioinformatics/btg207

Information Extraction From FDA Drug Labeling to Enhance Product-Specific Guidance Assessment Using Natural Language Processing

Yiwen Shi, Ping Ren, Yi Zhang, Xiajing Gong et al. • Frontiers in Research Metrics and Analytics (2021)

Towards the objectives of the UnitedStates Food and Drug Administration (FDA) generic drug science and research program, it is of vital importance in developing product-specific guidances (PSGs) with recommendations that can facilitate and ...

DOAJ Open Access (DOAJ) DOI: 10.3389/frma.2021.670006

Natural language processing in Alzheimer's disease research: Systematic review of methods, data, and efficacy

Arezo Shakeri, Mina Farmanbar • Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring (2025)

Abstract INTRODUCTION Alzheimer's disease (AD) prevalence is increasing, with no current cure. Natural language processing (NLP) offers the potential for non‐invasive diagnostics, social burden assessment, and research advancements in AD. M...

DOAJ Open Access (DOAJ) DOI: 10.1002/dad2.70082

ScispaCy: Fast and Robust Models for Biomedical Natural Language Processing

Mark Neumann, Daniel King, Iz Beltagy, Waleed Ammar • BioNLP Workshop and Shared Task (BioNLP) (2019)

Despite recent advances in natural language processing, many statistical models for processing text perform extremely poorly under domain shift. Processing biomedical and clinical text is a critically important application area of natural l...

OPENALEX cc-by DOI: https://doi.org/10.18653/v1/w19-5034

Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing

裕二 池谷, Robert Tinn, Hao Cheng, MICHAEL A. LUCAS et al. • ACM Transactions on Computing for Healthcare (2021)

Pretraining large neural language models, such as BERT, has led to impressive gains on many natural language processing (NLP) tasks. However, most pretraining efforts focus on general domain corpora, such as newswire and Web. A prevailing a...

OPENALEX Open Access DOI: https://doi.org/10.1145/3458754

Thyroid Ultrasound Appropriateness Identification Through Natural Language Processing of Electronic Health Records

Cristian Soto Jacome, MD, Danny Segura Torres, MD, Jungwei W. Fan, PhD, Ricardo Loor-Torres, MD et al. • Mayo Clinic Proceedings: Digital Health (2024)

Objective: To address thyroid cancer overdiagnosis, we aim to develop a natural language processing (NLP) algorithm to determine the appropriateness of thyroid ultrasounds (TUS). Patients and Methods: Between 2017 and 2021, we identified 18...

DOAJ Open Access (DOAJ) DOI: 10.1016/j.mcpdig.2024.01.001

Natural Language Processing of Social Media as Screening for Suicide Risk

Glen Coppersmith, Ryan Leary, Patrick Crutchley, Alex B. Fine • Biomedical Informatics Insights (2018)

Suicide is among the 10 most common causes of death, as assessed by the World Health Organization. For every death by suicide, an estimated 138 people's lives are meaningfully affected, and almost any other statistic around suicide deaths i...

OPENALEX cc-by-nc DOI: https://doi.org/10.1177/1178222618792860 PMC: 6111391

Analyse bibliométrique des mémoires défendus au Département des Sciences et Techniques Documentaires (2014 à 2018)

Jean Blanchard MAYI YUL • Ziglôbitha (2024)

Résumé : Analyser les travaux scientifiques est une tache aussi ardue que difficile qui demande beaucoup de munitie. Cet article fait une analyse bibliométrique des mémoires de licence (Bac+5) défendus au sein du Département des Sciences et...

DOAJ Open Access (DOAJ) DOI: 10.60632/ziglobitha.n011.12.vol.2.2024

Biomedical Natural Language Processing

Kevin Bretonnel Cohen, Dina Demner‐Fushman • Natural language processing (2014)

Biomedical Natural Language Processing is a comprehensive tour through the classic and current work in the field. It discusses all subjects from both a rule-based and a machine learning approach, and also describes each subject from the per...

OPENALEX DOI: https://doi.org/10.1075/nlp.11