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Co-optimization of therapeutic antibody affinity and specificity using machine learning models that generalize to novel mutational space

Emily K. Makowski, Patrick C. Kinnunen, Jie Huang, Lina Wu et al. • Nature Communications (2022)

Optimising antibody properties such as affinity can be detrimental to other key properties. Here the authors use machine learning to simplify the identification of antibodies with co-optimal levels of affinity and specificity for a clinical...

DOAJ Open Access (DOAJ) DOI: 10.1038/s41467-022-31457-3

Machine learning in chemoinformatics and drug discovery

Yu‐Chen Lo, Stefano Rensi, Wen Torng, Russ Biagio Altman • Drug Discovery Today (2018)

Chemoinformatics is an established discipline focusing on extracting, processing and extrapolating meaningful data from chemical structures. With the rapid explosion of chemical 'big' data from HTS and combinatorial synthesis, machine learn...

OPENALEX cc-by DOI: https://doi.org/10.1016/j.drudis.2018.05.010 PMC: 6078794

Machine Learning Model Coupled with Graphical User Interface for Predicting Mechanical Properties of Flax Fiber

T. Nageshkumar, Prateek Shrivastava, L. Ammayapan, Manisha Jagadale et al. • Journal of Natural Fibers (2025)

Machine learning model coupled with graphical user interface was developed to predict mechanical properties of flax fiber. The experiment was conducted using test setup which applies constant rate of loading (CRL). Flax fiber was tested und...

DOAJ Open Access (DOAJ) DOI: 10.1080/15440478.2025.2502662

Development of a Data-Based Machine Learning Model for Classifying and Predicting Property Damage Caused by Fire

Jongho Lee, Jiuk Shin, Jaewook Lee, Chorong Park et al. • Applied Sciences (2023)

Large fires in factories cause severe human casualties and property damage. Thus, preparing more economical and efficient management strategies for fire prevention can significantly improve fire safety. This study deals with property damage...

DOAJ Open Access (DOAJ) DOI: 10.3390/app132111866

A Protein‐Centric Strategy Coupled with Match‐Between‐Run Glycoproteomics Enables Discovery of Robust Site‐Specific Glycan Biomarkers for Hepatocellular Carcinoma

Lei Liu, Taiheng Ma, Qi Liu, He Zhu et al. • Advanced Science (2026)

ABSTRACT Dysregulated protein glycosylation is a hallmark of cancer, and systematic investigation of glycosylation patterns is crucial for identifying biomarkers. However, current glycoproteomic studies are constrained by the limited quanti...

DOAJ Open Access (DOAJ) DOI: 10.1002/advs.202516299

lab2clean: a novel algorithm for automated cleaning of retrospective clinical laboratory results data for secondary uses

Ahmed Medhat Zayed, Arne Janssens, Pavlos Mamouris, Nicolas Delvaux • BMC Medical Informatics and Decision Making (2024)

Abstract Background The integrity of clinical research and machine learning models in healthcare heavily relies on the quality of underlying clinical laboratory data. However, the preprocessing of this data to ensure its reliability and acc...

DOAJ Open Access (DOAJ) DOI: 10.1186/s12911-024-02652-7

Context Aware Evapotranspiration (ETs) for Saline Soils Reclamation

Arfat Ahmad Khan, Muhammad Asif Nauman, Rab Nawaz Bashir, Rashid Jahangir et al. • IEEE Access (2022)

Accurate Evapotranspiration for saline soils (ETs) is important as well as challenging for the reclamation of saline soils through an effective leaching process. Evapotranspiration (ET) by FAO-56 Penman-Monteith standard method is complex, ...

DOAJ Open Access (DOAJ) DOI: 10.1109/ACCESS.2022.3206009

Python Machine Learning

Sebastian Raschka (2015)

Unlock deeper insights into Machine Leaning with this vital guide to cutting-edge predictive analyticsAbout This BookLeverage Python's most powerful open-source libraries for deep learning, data wrangling, and data visualizationLearn effect...

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Optimization for Machine Learning

S. Sra, S. Nowozin, Stephen J. Wright • The MIT Press eBooks (2011)

An up-to-date account of the interplay between optimization and machine learning, accessible to students and researchers in both communities. The interplay between optimization and machine learning is one of the most important developments ...

OPENALEX DOI: https://doi.org/10.7551/mitpress/8996.001.0001

Machine learning and deep learning

Christian Janiesch, Patrick Zschech, Kai Heinrich • Electronic Markets (2021)

Abstract Today, intelligent systems that offer artificial intelligence capabilities often rely on machine learning. Machine learning describes the capacity of systems to learn from problem-specific training data to automate the process of a...

OPENALEX cc-by DOI: https://doi.org/10.1007/s12525-021-00475-2

The voice of depression: speech features as biomarkers for major depressive disorder

Felix Menne, Felix Dörr, Julia Schräder, Johannes Tröger et al. • BMC Psychiatry (2024)

Abstract Background Psychiatry faces a challenge due to the lack of objective biomarkers, as current assessments are based on subjective evaluations. Automated speech analysis shows promise in detecting symptom severity in depressed patient...

DOAJ Open Access (DOAJ) DOI: 10.1186/s12888-024-06253-6

Machine learning-based diagnostic prediction of minimal change disease: model development study

Ryunosuke Noda, Daisuke Ichikawa, Yugo Shibagaki • Scientific Reports (2024)

Abstract Minimal change disease (MCD) is a common cause of nephrotic syndrome. Due to its rapid progression, early detection is essential; however, definitive diagnosis requires invasive kidney biopsy. This study aims to develop non-invasiv...

DOAJ Open Access (DOAJ) DOI: 10.1038/s41598-024-73898-4

A feature selection and scoring scheme for dimensionality reduction in a machine learning task

PHILEMON UTEN EMMOH, christopher ifeanyi Eke, Timothy Moses • Journal of Nigerian Society of Physical Sciences (2025)

Selection of important features is very vital in machine learning tasks involving high-dimensional dataset with large features. It helps in reducing the dimensionality of a dataset and improving model performance. Most of the feature select...

DOAJ Open Access (DOAJ) DOI: 10.46481/jnsps.2025.2273

Selection of target-binding proteins from the information of weakly enriched phage display libraries by deep sequencing and machine learning

Tomoyuki Ito, Thuy Duong Nguyen, Yutaka Saito, Yoichi Kurumida et al. • mAbs (2023)

Despite the advances in surface-display systems for directed evolution, variants with high affinity are not always enriched due to undesirable biases that increase target-unrelated variants during biopanning. Here, our goal was to design a ...

DOAJ Open Access (DOAJ) DOI: 10.1080/19420862.2023.2168470

Predicting Choroidal Nevus Transformation to Melanoma Using Machine Learning

Prashant D. Tailor, MD, Piotr K. Kopinski, MD, PhD, Haley S. D’Souza, MD, David A. Leske, MS et al. • Ophthalmology Science (2025)

Purpose: To develop and validate machine learning (ML) models to predict choroidal nevus transformation to melanoma based on multimodal imaging at initial presentation. Design: Retrospective multicenter study. Participants: Patients diagnos...

DOAJ Open Access (DOAJ) DOI: 10.1016/j.xops.2024.100584

Leveraging Artificial Intelligence to Predict Posterior Malleolus Fracture Extension in Tibial Shaft Fractures

Junaid Aamir MBChB MRes MRCS, Chijioke Orji MBBS, MRCS, Lyndon Mason BMBS MRCS FRCS • Foot & Ankle Orthopaedics (2025)

Research Type: Level 3 - Retrospective cohort study, Case-control study, Meta-analysis of Level 3 studies Introduction/Purpose: Occult posterior malleolar fractures (PMFs) are reported commonly in tibial shaft fractures. Presurgical identif...

DOAJ Open Access (DOAJ) DOI: 10.1177/2473011425S00315

Assessing climate and land use impacts on surface water yield using remote sensing and machine learning

Amanuel Kumsa Bojer, Muluneh Woldetsadik Abshare, Fitsum Mesfin, Ayad M. Fadhil Al-Quraishi • Scientific Reports (2025)

Abstract Climate and land use changes are critical factors affecting watershed water yields, with significant implications for water resources at both local and regional levels. This study examined the combined effects of temporal and spati...

DOAJ Open Access (DOAJ) DOI: 10.1038/s41598-025-03493-8