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Deep Learning in Chemistry

Adam C. Mater, Michelle L. Coote • Journal of Chemical Information and Modeling (2019)

Machine learning enables computers to address problems by learning from data. Deep learning is a type of machine learning that uses a hierarchical recombination of features to extract pertinent information and then learn the patterns repres...

OPENALEX DOI: https://doi.org/10.1021/acs.jcim.9b00266

CViewer: a Java-based statistical framework for integration of shotgun metagenomics with other omics datasets

Orges Koci, Richard K. Russell, M. Guftar Shaikh, Christine Edwards et al. • Microbiome (2024)

Abstract Background Shotgun metagenomics for microbial community survey recovers enormous amount of information for microbial genomes that include their abundances, taxonomic, and phylogenetic information, as well as their genomic makeup, t...

DOAJ Open Access (DOAJ) DOI: 10.1186/s40168-024-01834-9

GAUSSIAN PROCESSES FOR MACHINE LEARNING

Matthias Seeger • International Journal of Neural Systems (2004)

Gaussian processes (GPs) are natural generalisations of multivariate Gaussian random variables to infinite (countably or continuous) index sets. GPs have been applied in a large number of fields to a diverse range of ends, and very many dee...

OPENALEX Open Access DOI: https://doi.org/10.1142/s0129065704001899

Gut Microbiota and Targeted Biomarkers Analysis in Patients With Cognitive Impairment

Shourong Lu, Ying Yang, Qiao Xu, Shuqiang Wang et al. • Frontiers in Neurology (2022)

Gut microbial alteration is closely associated with brain disorders including cognitive impairment (CI). Gut microbes have the potential to predicate the development of diseases. However, the gut microbial markers for CI remain to be elucid...

DOAJ Open Access (DOAJ) DOI: 10.3389/fneur.2022.834403

Opportunities and Challenges for Machine Learning in Materials Science

Dane D. Morgan, Ryan Jacobs • Annual Review of Materials Research (2020)

Advances in machine learning have impacted myriad areas of materials science, such as the discovery of novel materials and the improvement of molecular simulations, with likely many more important developments to come. Given the rapid chang...

OPENALEX Open Access DOI: https://doi.org/10.1146/annurev-matsci-070218-010015

Quantum Chemistry in the Age of Machine Learning

Pavlo O. Dral • The Journal of Physical Chemistry Letters (2020)

As the quantum chemistry (QC) community embraces machine learning (ML), the number of new methods and applications based on the combination of QC and ML is surging. In this Perspective, a view of the current state of affairs in this new and...

OPENALEX Open Access DOI: https://doi.org/10.1021/acs.jpclett.9b03664

Neural Networks for Machine Learning

Richard F. Lyon • Cambridge University Press eBooks (2017)

In order for a digital neocortex to learn a new skill, it will still require many iterations of education, just as a biological neocortex does, but once a single neocortex somewhere and at some time learns something, it can share that knowl...

OPENALEX Open Access DOI: https://doi.org/10.1017/9781139051699.031

MATCHA, a novel regional hydroclimate-chemical reanalysis: System description and evaluation

C. Roychoudhury, R. Kumar, C. He, W. Y. Y. Cheng et al. • Earth System Science Data (2026)

We present MATCHA (Model for Atmospheric Transport and Chemistry in Asia), a 17-year (2003–2019) regional hydroclimate-chemical reanalysis for Asia (58–140° E, 4– 40° N) at 12 km resolution. MATCHA couples the Weather Research and Forecasti...

DOAJ Open Access (DOAJ) DOI: 10.5194/essd-18-5209-2026

Machine Learning in Enzyme Engineering

Stanislav Mazurenko, Zbyněk Prokop, Jiřı́ Damborský • ACS Catalysis (2019)

Abstract Enzyme engineering plays a central role in developing efficient biocatalysts for biotechnology, biomedicine, and life sciences. Apart from classical rational design and directed evolution approaches, machine learning methods have b...

OPENALEX other-oa DOI: https://doi.org/10.1021/acscatal.9b04321

A Topical Review of Graph Embedding in Graph Neural Networks

Willian Borges De Lemos, Lucas De Angelo Martins Ribeiro, Vanessa Telles Da Silva, Alessandro De Lima Bicho et al. • IEEE Access (2025)

Graph embeddings map graph-structured data into vector spaces for machine learning tasks. In Graph Neural Networks (GNNs), these embeddings are computed through message passing and support tasks such as node classification, link prediction ...

DOAJ Open Access (DOAJ) DOI: 10.1109/ACCESS.2025.3643796

Using generalized random forests to characterize vulnerability to adverse health outcomes following wildfire smoke exposure in California

Noémie Letellier, Caitlin G. Jones-Ngo, Michael W. Cheung, Rosana Aguilera et al. • Environment International (2025)

Background: As the health burden attributable to wildfire activity increases under climate change, it is crucial to determine which subgroups face heightened vulnerability to wildfire smoke. Marginalized communities may experience dispropor...

DOAJ Open Access (DOAJ) DOI: 10.1016/j.envint.2025.109955

Advancing Biosensors with Machine Learning

Feiyun Cui, Yun Yue, Yi Zhang, Ziming Zhang et al. • ACS Sensors (2020)

Chemometrics play a critical role in biosensors-based detection, analysis, and diagnosis. Nowadays, as a branch of artificial intelligence (AI), machine learning (ML) have achieved impressive advances. However, novel advanced ML methods, es...

OPENALEX DOI: https://doi.org/10.1021/acssensors.0c01424

Machine learning in automated text categorization

Fabrizio Sebastiani • ACM Computing Surveys (2002)

The automated categorization (or classification) of texts into predefined categories has witnessed a booming interest in the last 10 years, due to the increased availability of documents in digital form and the ensuing need to organize them...

OPENALEX Open Access DOI: https://doi.org/10.1145/505282.505283

Automatic Differentiation in Machine Learning: a Survey

Atılım Güneş Baydin, Barak A. Pearlmutter, Alexey Radul, Jeffrey Mark Siskind • Maynooth University ePrints and eTheses Archive (Maynooth University) (2015)

Derivatives, mostly in the form of gradients and Hessians, are ubiquitous in machine learning. Automatic differentiation (AD) is a technique for calculating derivatives of numeric functions expressed as computer programs efficiently and acc...

OPENALEX Open Access

An Introduction to Machine Learning

Solveig Badillo, Balázs Bánfai, Fabian Birzele, Iakov I. Davydov et al. • Clinical Pharmacology & Therapeutics (2020)

In the last few years, machine learning (ML) and artificial intelligence have seen a new wave of publicity fueled by the huge and ever-increasing amount of data and computational power as well as the discovery of improved learning algorithm...

OPENALEX cc-by-nc-nd DOI: https://doi.org/10.1002/cpt.1796 PMC: 7189875